Accelerating the Pace of Discovery

Resources

National Center for Biotechnology information (NCBI)

The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.

http://www.ncbi.nlm.nih.gov/

Roadmap Epigenomics Project

The NIH Roadmap Epigenomics Mapping Consortium was launched with the goal of producing a public resource of human epigenomic data to catalyze basic biology and disease-oriented research.

http://www.roadmapepigenomics.org

ExPASy Proteomics Server

The ExPASy (Expert Protein Analysis System) proteomics server of the Swiss Institute of Bioinformatics (SIB) is dedicated to the analysis of protein sequences and structures.

http://www.expasy.ch/

Human Protein Reference Database

The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.

http://www.hprd.org/

GeneCards

GeneCards® is a searchable, integrated database of human genes that provides concise genomic, proteomic, transcriptomic, genetic and functional information on all known and predicted human genes.

http://www.genecards.org/index.shtml

NCI, SEER

Providing information on cancer statistics.

http://seer.cancer.gov/

PUCL

Purdue University Cytometry Labs. Cytomics information and educational material.

http://www.cyto.purdue.edu/

World Intellectual Property Organization (WIPO)

The Intellectual Property Digital Library Web site provides access to intellectual property data collections hosted by the World Intellectual Property Organization.

http://www.wipo.int/ipdl/en/

BioModels Database

BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. Models present in BioModels Database are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc.

http://www.ebi.ac.uk/biomodels-main/

The Molecular Level

Tools for Structural Biology Education and Training Tools for Structural Biology Education and Training

http://spdbv.vital-it.ch/TheMolecularLevel/index.html

BioCyc

BioCyc is a collection of 505 Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism.

http://www.biocyc.org/

Genatlas

GENATLAS contains relevant information with respect to gene mapping and genetic diseases.

http://genatlas.medecine.univ-paris5.fr/

Harvester

Harvester crawls and crosslinks numerous sites.

http://harvester.fzk.de/harvester/

Mapping Epitopes on Protein Surfaces

Given a protein PDB file, MEPS generate all peptides of a given length (with mismatches) able to mimic exposed regions of the protein.

http://bcc20.caspur.it/meps/index.php

Stanford University Library

Stanford University Library – HighWire Press hosts the largest repository of free, full-text, peer-reviewed content, with 915 journals and 1,149,154 free, full-text articles online.

http://highwire.stanford.edu/lists/allsites.dtl

The Sequence Manipulation Suite

The Sequence Manipulation Suite is a collection of web-based programs for analyzing and formatting DNA and protein sequences.

http://bioinformatics.org/sms/index.html

Protocol Online

Protocol Online is a database of research protocols in a variety of life science fields.

http://www.protocol-online.org/

Primer3

Primer3 is a widely used program for designing PCR primers.

https://bioinfo.ut.ee/primer3/

siRNA

siRNA – This site helps you select siRNAs to knock down your gene of interest.

http://sirna.wi.mit.edu/

Venn Diagram Generator (2 way)

Venn Diagram Generator (2 way)

http://jura.wi.mit.edu/bioc/tools/venn.php

Venn Diagram Generator (3 way)

Venn Diagram Generator (3 way)

http://http://jura.wi.mit.edu/bioc/tools/venn3way/index.php

Redundant List Analysis

Redundant List Analysis

http://barc.wi.mit.edu/tools/redundant/

Compare Two Lists

Compare Two Lists

http://barc.wi.mit.edu/tools/compare/

Compare Three Lists

Compare Three Lists

http://barc.wi.mit.edu/tools/compare_3_lists/

Extract UTR Calculator

Extract UTR Calculator

http://barc.wi.mit.edu/tools/utrs/